Slides in class

(Materials that will be used in class)

• Aug. 20th Introduction 

• Aug. 22nd Unix/Linux/MacOSX I

• Aug. 27th Unix/Linux/MacOSX II

• Aug. 29th Unix/Linux/MacOSX III

• Sep. 5th Unix/Linux/MacOSX IV

• Sep. 10th Unix/Linux/MacOSX V

• Sep. 12th Unix/Linux/MacOSX VI

• Sep. 17th Python I

• Sep. 19th Python II

• Sep. 24th Python III

• Sep. 26th BioPythonI 

• Oct. 1st BioPythonII (datafiles)

• Oct. 3rd BioPython III (datafiles)

• Oct. 8th BioPython IV

• Oct. 9th Multiple Alignments (datafiles)

• Oct. 22nd Multiple Alignments

• Oct. 24th Next Generation Sequencing

• Oct. 29th Next Generation Sequencing II

      Project Outline

• Oct. 31st Next Generation Sequencing III

• Nov. 5th Next Generation Sequencing IV (extra reading)

• Nov. 7st How to use TopHat (extra reading)

• Nov. 12th Differential gene expression

• Nov. 14th Differential gene expression, Pathways, Genomic variations

• Nov. 19th Differential gene expression, Pathways, Genomic variations

• Nov. 29th Promoters

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• Homework 1 (due Sep. 27th)

• Homework 2 (due Nov. 1st)

• Homework 3 (due Nov. 29th)

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